YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16801234
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	28	0.96
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	149	0.99
Transmembrane Helix	150	170	0.95
Cytoplasmic	171	186	0.94
Transmembrane Helix	187	209	0.88
Non-Cytoplasmic	210	233	0.89
Transmembrane Helix	234	254	0.92
Cytoplasmic	255	259	0.88
Transmembrane Helix	260	278	0.93
Non-Cytoplasmic	279	298	0.87
Transmembrane Helix	299	319	0.94
Cytoplasmic	320	331	0.78
Transmembrane Helix	332	352	0.95
Non-Cytoplasmic	353	368	0.91
Transmembrane Helix	369	391	0.94
Cytoplasmic	392	401	0.85
Transmembrane Helix	402	421	0.94
Non-Cytoplasmic	422	541	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLFKRISFI LIVLYILIVP VQHVSAHAYL ENSNPADQSH IKTAPEKVTL VFNEEIEADF  60
   61 PLIEVKDSSG KRVETGKTSV SKKNNHMVEA SLPAELKADV YSVSWRVVSA DGHAVTGIIS 120
  121 FKLGDTKATF QESEVPSSGA DLQISSIQKA ILYIGFSLFI GVLVFGLGLY PRKEQISEKI 180
  181 SGRLKKVTWI ALALLGVALF MQLFVQTSIT TGVSISESFG PSKLAAFLTT KTGYIWISEF 240
  241 IVWLLLAIFT IMMFFKNKQW SWFALLTESA LIGYLIFAKA QNGHAAASAD KIVSITADML 300
  301 HMIAASVWVG GILVLLFVLP KTGKAREIWS RFAIVAIIAV ASILVSGLLM AVMNIGQMSN 360
  361 LFTTNYGKIL LFKIGLFLLM ALLGLGHYIY LKLKNKKLPF KTILIELIIG TIILIVASVL 420
  421 TNVQTPPPPA PKAFDETIAA KGENAKINLR VEPATVGQNQ FIITFTSADG ATKTDFEQVT 480
  481 ITTKSTKTDE KATFQAKLAN ENQYFAEGLY INQTGKWEIT VHGLTKDFTD INQTFTTNIT 540
  541 Q