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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SYT5_ARATH
Protein type: Transmembrane
Type Confidence: 0.91
Topology Confidence: 0.57
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFIVGVVIG LLVGIAIIIG FVKLENSRSK LRSELANTVA AFARMTVEDS RKLLPPEFYP  60
   61 SWVVFSERQK LTWLNHHLTK IWPYVDEAAS ELIKASVEPV LEQYRPAIVA SLTFSKLTLG 120
  121 TVAPQFTGVS VIDGDKNGIT LELDMQWDGN PNIVLGVKTL VGVSLPIQVK NIGFTGVFRL 180
  181 IFRPLVEDFP CFGAVSVSLR EKKKLDFTLK VVGGDISAIP GLSEAIEETI RDAVEDSITW 240
  241 PVRKVIPIIP GDYSDLELKP VGMLEVKLVQ AKNLTNKDLV GKSDPFAKMF IRPLREKTKR 300
  301 SKTINNDLNP IWNEHFEFVV EDASTQHLVV RIYDDEGVQA SELIGCAQIR LCELEPGKVK 360
  361 DVWLKLVKDL EIQRDTKNRG EVHLELLYIP YGSGNGIVNP FVTSSMTSLE RVLKNDTTDE 420
  421 ENASSRKRKD VIVRGVLSVT VISAEEIPIQ DLMGKADPYV VLSMKKSGAK SKTRVVNDSL 480
  481 NPVWNQTFDF VVEDGLHDML VLEVWDHDTF GKDYIGRCIL TLTRVIMEEE YKDWYPLDES 540
  541 KTGKLQLHLK WMAQSIYRDS 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle