YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18977745, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMEEEIKPIF LSIIGNTLLG IIKIVVGVIN SSIALISDGV HSLSDTITSL IGLIGIKISR  60
   61 KPPDSSHPFG HSRFEPLFAF FMGELLIVIA YEIARDSITR IFMKKLTSPT LLMISVAIFS 120
  121 MVTKEVMAQY TLHVGRKLNN QILIADAYHH RSDVLTTIAV LIGLIAQKYG VWFGDALAGL 180
  181 IVSLFIAKVA IKVILENVGY LTGRAPPYEV CKKIEEVAKS VKGVVGVHDL KAHYVGPKLH 240
  241 VELHVEVPPN IPLKKAHDIS EEVKRKVEEL PEVEQAFIHV DLALK

Type	Start	End	Confidence
Cytoplasmic	1	8	0.94
Transmembrane Helix	9	34	0.79
Non-Cytoplasmic	35	75	0.76
Transmembrane Helix	76	94	0.91
Cytoplasmic	95	105	0.67
Transmembrane Helix	106	123	0.85
Non-Cytoplasmic	124	170	0.70
Transmembrane Helix	171	191	0.77
Cytoplasmic	192	285	0.88