YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|20090573, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.93
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSGTFRRKQ SKVGLAPGTL VHVGEKKAEK VTIRVWIYND EELIEKELQT IDECQALKNQ  60
   61 PGMKLWINVD GLDRIEVIEK LGSCFKIHPL TLEDILNAGQ RPKMEDYDSY IYTVLKMMLL 120
  121 DTENEEIVID QVSIIIGPNY ILSFQEREGD VFDLLRERLK NPASRLRKGG VDYLAYGLID 180
  181 AIIDNYFLIL EHFGEKIEDL EDELVRDPDP DTLKIIQKYR RDMILLRKSV WPLRELINGL 240
  241 QKVESELITE ATQIYLRDIY DHTIQVIDSI EAFRDILASM VDVYLSSVSN RMNDIMKVLT 300
  301 IIATIFIPLT FIAGVYGMNF DYMPELRWHW GYPVVMLSMM LLGISMFFYF KKKRWI

Type	Start	End	Confidence
Cytoplasmic	1	297	0.98
Transmembrane Helix	298	318	0.93
Non-Cytoplasmic	319	328	0.87
Transmembrane Helix	329	350	0.95
Cytoplasmic	351	356	0.96