YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|19917408, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEHEERFEKA VQVTGVGLFV NLGLTLFKLF AGILGNSTAM VADAVHSLSD FLTDIVVIFG  60
   61 FKVAKKPVDE SHNYGHGKIE TLSASLVGLM LLVVAGQILL YGLRRTLLFA QGGNLEQPAL 120
  121 IALYAALLSV ISKEFMYHYT ILQARKINSM ALTANAWHHR SDALSSLCTL AGIGAAIFLG 180
  181 GKWVVLDPLM AVFLSFIILN VALKIFRSSI NELIEASLDE ETEGQIREII RNTEGVKAVS 240
  241 NLKTRRIGNN IAVDVRIKVD NALDIGEANR ISIHVEHNLK KAFGPYTYVL VKAEPYEREP 300
  301 AGNPEDGKFP EHPMRSEKHD TCLRKQPIKK AKTTGYKDSR R

Type	Start	End	Confidence
Cytoplasmic	1	10	0.93
Transmembrane Helix	11	32	0.87
Non-Cytoplasmic	33	43	0.68
Transmembrane Helix	44	63	0.79
Cytoplasmic	64	80	0.83
Transmembrane Helix	81	101	0.93
Non-Cytoplasmic	102	119	0.79
Transmembrane Helix	120	141	0.85
Cytoplasmic	142	160	0.86
Transmembrane Helix	161	180	0.90
Non-Cytoplasmic	181	187	0.61
Transmembrane Helix	188	206	0.90
Cytoplasmic	207	341	0.94