YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|19918441, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVHMKLADF KTYKLELFFF SILVVLSYAL FSGNDSGTGT ESMNNYFWVP STVMQSIAAV  60
   61 YAVFIAIFAL SLQRNLDSIH SIANRLKPPL KIVSYTAVGS IYLNGLMLII FSLHSPSELK 120
  121 IELMLFTSLL SLVASLIAIV YLSMEMLSDV SGLKTSSEKF TYLTNLLREL EGWSSSGQME 180
  181 LSPGDMELCV QGLEDEKPEV RIAAAQLLGW LGDEQAVDAL LRKLADKNPR VREAAVEALG 240
  241 RVGDENIVAE LIGCLEDKNK GLRLQAVRAL SRLGDERAVD PLVKKLEDKA PEVQAAAAEA 300
  301 LGNLKSQDSM DVLLKKLEES PMAGAPTEFQ VQVLTALGKI GDEKALAAIL SRLDSPYPDI 360
  361 RKHAAEALGN LRDEKAVPHL VKKLADISPE VRNASVYALG NLGDERAVSP LLRMLEEPDP 420
  421 ELRITAVYAL GNLRAPQAIS PLINMLDDDN PWVRKCTAEA LGKIGDIKAT DPLVKNLDDP 480
  481 DSNVRWAAAE ALRMLDKRDL RKDSNGNL

Type	Start	End	Confidence
Cytoplasmic	1	11	0.97
Transmembrane Helix	12	32	0.90
Non-Cytoplasmic	33	51	0.88
Transmembrane Helix	52	72	0.94
Cytoplasmic	73	91	0.94
Transmembrane Helix	92	113	0.94
Non-Cytoplasmic	114	122	0.80
Transmembrane Helix	123	144	0.90
Cytoplasmic	145	508	0.95