YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|20806884
Protein type:	Globular with Signal Peptide
Type Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIDKTKFLDR RVLMKRFKGI VAFLVIFALV FSLAACSTQN ATKPQETAKP AEEVKTQFPL  60
   61 KITDFLGREV TIEKQPERIV SLVPSVTELL FAIGAGSKVV GVTDFDNYPP EVKDIPKVGG 120
  121 FKGPNIEAIT AQKPDIIFAS RLSGKEQMES LEKMGIPVVV LDAQNFDQIY QSIELLGKIT 180
  181 GNEKKAEKVI NDMKNKIKEI SDKVKDLPKV KVFYLVSLDG NWTAGKGTFI DEIINLAGGE 240
  241 NVASDVNGWA QYSIEELVKK NPDVIITSPH AGDVKDLKNM AGYKDTNAVK NDKVFVVSND 300
  301 DIIVRGTNRI VLGLEEVAKF LHPEAFK

Type	Start	End	Confidence
Signal Peptide	1	36	0.85
N-region	1	27
H-region	28	33
C-region	34	36
Cleavage Site	36	37
Non-Cytoplasmic	37	327	0.99