YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|20808743
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARKLPDPQY IRDNYEYMYL TKDLKENTYI FNTLLAGNND VVFRNIKIGR RKIPACLIYI  60
   61 DGLADKSLVA HNVLFPLMIE TQKIDENPGT GDEFFERVRE LFVTIGEVNV KDKIGDVMDD 120
  121 LLSGETVLLI DGIKKALILS TKGWEGRNIS ESTTESYVRG PKEAFVETLR INTSMLRRRI 180
  181 KHPDFVIEDM KIGKYSKTDV AIAYIKSIAD DKVLQEVKKR LKKIQIDGII DSGYIEEFIE 240
  241 DNPFSPFPQI AHSEKPDRIA AEILEGKVAI IVDGSPFVLT VPAVFAQFFQ AGEDYYERYF 300
  301 LSSALRVLRI IAMITALLFP SIYIAETTFH QEMIPTQLAI SIAAQREGVP FPALLEALFM 360
  361 EVTFEILREA GIRLPMQVGQ AVSIVGGLVI GQAAVQAGLV SPAMVIVVAM TGIASFAIPA 420
  421 FNVAITFRLL RFIIMIAAGT LGFFGIIMVI MMVLAHMASL ESFGVPYLSP ITPCRSQELT 480
  481 DVFMRVPWWA KILRPRTIQR KNIIRQEDKR G

Type	Start	End	Confidence
Cytoplasmic	1	268	0.75
Transmembrane Helix	269	289	0.39
Non-Cytoplasmic	290	304	0.46
Transmembrane Helix	305	325	0.87
Cytoplasmic	326	375	0.56
Transmembrane Helix	376	395	0.86
Non-Cytoplasmic	396	402	0.65
Transmembrane Helix	403	425	0.89
Cytoplasmic	426	432	0.77
Transmembrane Helix	433	458	0.87
Non-Cytoplasmic	459	511	0.92