YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21228742, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.93
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPSTPGRKQ SNVGLAPGTL VHVGEKKAEK TVIKAWLYNS EKLIEKELQT VDECQELKGQ  60
   61 PGMNLWINVD GLDQIGIIEK LGGYFGVHPL TLEDVLNTGQ RPKMEDYDSY IYAVLKMMLL 120
  121 DEEREEILID QVSIIFGTNY ILSFQEREGD AFNPIRDRLK NSASRLRKNG VDLLAYSLID 180
  181 AVVDNYFLIL EHFGEEIEDL EEQLIVDPMP ETLKAIQKYK RDMITLRRSV WPLRELINSL 240
  241 QRTESQLIKE STQIYLRDVY DHTIQVIDSI EAFRDILSSM VDVYLSSLSH RMNDIMKVLT 300
  301 IIATIFIPLT FIAGVYGMNF EYMPELKWRW GYPAVMFAMT ILGISMFLYF KKRRWV

Type	Start	End	Confidence
Cytoplasmic	1	297	0.98
Transmembrane Helix	298	318	0.93
Non-Cytoplasmic	319	329	0.87
Transmembrane Helix	330	350	0.95
Cytoplasmic	351	356	0.94