YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|66767990, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.89
Transmembrane Helix	21	39	0.80
Non-Cytoplasmic	40	55	0.65
Transmembrane Helix	56	77	0.86
Cytoplasmic	78	94	0.95
Transmembrane Helix	95	117	0.94
Non-Cytoplasmic	118	124	0.83
Transmembrane Helix	125	144	0.93
Cytoplasmic	145	163	0.77
Transmembrane Helix	164	182	0.92
Non-Cytoplasmic	183	190	0.59
Transmembrane Helix	191	210	0.91
Cytoplasmic	211	224	0.85
Transmembrane Helix	225	243	0.63
Non-Cytoplasmic	244	264	0.61
Transmembrane Helix	265	285	0.64
Cytoplasmic	286	304	0.90
Transmembrane Helix	305	329	0.89
Non-Cytoplasmic	330	338	0.84
Transmembrane Helix	339	361	0.92
Cytoplasmic	362	369	0.92
Transmembrane Helix	370	388	0.93
Non-Cytoplasmic	389	395	0.64
Transmembrane Helix	396	415	0.93
Cytoplasmic	416	426	0.78
Transmembrane Helix	427	448	0.88
Non-Cytoplasmic	449	457	0.71
Transmembrane Helix	458	479	0.91
Cytoplasmic	480	499	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAETSTMTS PTPPPRSLGS RAAGGAAVTM IGQSAKMIVQ FGGIVLLARL LTPYDYGLMA  60
   61 MVTAIVGAAE ILRDFGLSAA AVQAKHVSRE QRDNLFWINS GIGLMLSVVV FATAHWIADF 120
  121 YHEPALVTIS QALAVTFLLN GMTTQYRAHL SRGLRFGQVA LSDVGSQVLG LGAAVAAALA 180
  181 GWGYWALIVQ QVVQAIVNLI IAGACARWLP RGYARQAPMR DFMSFGWNLM AAQLLGYASR 240
  241 NVGQVIIGWR TGPDALGLYN RAFQLLMMPL NQINAPATSV ALPVLSQLQD ERERYSAFLL 300
  301 RGQTVMVHLI FALFAFACAL AMPLIVLVLG EQWREAVPLF QVLTLGGIFQ TASYATYWVF 360
  361 LSKGLMREQL VYSLVGRILL IACIFVGSRW GAMGVAIGYS FGLLLIWPLS LVWIGKITDA 420
  421 PVGALFVNAM RALVAYGIAG GCAYYASVTV GGPLWQQLLV GAGAMALVCL LALAWPGFRR 480
  481 DVVAIVNIRK LLTQAKARR