YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|65321092, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.91
Transmembrane Helix	20	40	0.90
Non-Cytoplasmic	41	46	0.81
Transmembrane Helix	47	65	0.98
Cytoplasmic	66	85	0.97
Transmembrane Helix	86	109	0.92
Non-Cytoplasmic	110	125	0.83
Transmembrane Helix	126	146	0.88
Cytoplasmic	147	158	0.63
Transmembrane Helix	159	179	0.87
Non-Cytoplasmic	180	216	0.93
Transmembrane Helix	217	238	0.91
Cytoplasmic	239	266	0.92
Transmembrane Helix	267	288	0.91
Non-Cytoplasmic	289	299	0.87
Transmembrane Helix	300	322	0.88
Cytoplasmic	323	348	0.89
Transmembrane Helix	349	371	0.92
Non-Cytoplasmic	372	382	0.78
Transmembrane Helix	383	404	0.93
Cytoplasmic	405	413	0.81
Transmembrane Helix	414	437	0.86
Non-Cytoplasmic	438	469	0.96
Transmembrane Helix	470	494	0.92
Cytoplasmic	495	501	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLYIASEKI KIRHTFLNKL TWLVPFATML IAFLLSADYF QLSSYNWWYI TMLPGMVSLS  60
   61 CVLLAEKDKK MNNRSILSLP ASLKRVWISK VLLILGILSF SCILFFCGIE LSSLLVNKEN 120
  121 FRIIPTVNAL LGSVLLIVTF MWQIPICLFL GNKIGLFPTL LXNVGANGXF GVVLATKNIW 180
  181 MISPYTYPSR LMIPILKILP NGLYAETGSV TFNXTTFLRC ILPGIVFLCV FPVFTYVTAK 240
  241 CLKSRRQNNM AVLSRVLRAD FIXMKHTIFF WIHVAMPIIG IALFLSYYSF SKLDSINKVL 300
  301 GYIQVLSISF PLLISIVCSS VVEQEALAGN FKELLSTEYG RRKALISKVC LLLICGFCST 360
  361 MLAVVGFATG FHFLLGQNEI PFALYVEISF ILFSCQIFMY IWHLFLNFRF SKGASIGIGI 420
  421 IESLLAALML TGMGDVIWKY TPCAWSMRLC NYFLEYKLSP SSIRALPVEA ATGAVICVCF 480
  481 TIIAFVISLM WFSFYEGRKE M