YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|162354300, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MREFKSMKKT SLLLSALAIS VGLGLASVPM VSAAALPAAV AGQTLPSLAP MLEKVLPAVV  60
   61 SVHVSGSQAQ QQRLPEEFKF FFGPNAPSGK ESSRPFEGLG SGVIINAEKG YILTNNHVIN 120
  121 NADKIRVQLN DGREYDAKLL GRDEQTDIAL LQLTDAKNLT AIKIADSDNL RVGDFAVAVG 180
  181 NPFGLGQTAT SGIISALGRS GLNLEGLENF IQTDASINRG NSGGALVNLD GELIGINTAI 240
  241 LAPGGGNIGI GFAIPSNMAQ NLSQQLIEFG EVKRGLLGIR GSEMTADIAK AFNIDAQRGA 300
  301 FVSEVLPKSA AAKAGIKPGD VLISVDGKKI SSFAELRAKV GTTGPGKTIK IGLLREGKPL 360
  361 EVSVTLDNSS STSTSAENLS PSLQGASLSN GELKDGSKGI KVDSVTKGSP AAQSGLQKDD 420
  421 VIIAVNRERV KDIAELRKAI EAKPAVIALN IVRGEDNIYL LIR

Type	Start	End	Confidence
Signal Peptide	1	33	0.99
N-region	1	24
H-region	25	30
C-region	31	33
Cleavage Site	33	34
Non-Cytoplasmic	34	463	0.99