YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21961126, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESAVSLSLW QQCLARLQDE LPATEFSMWI RPLQAELSDN TLALYAPNRF VLDWVRDKYL  60
   61 NNINGLLNDF CGTEVPLLRF EVGSKPAARA HNNPVTASVS APVAPVTRSA PMRPSWDNSP 120
  121 AQPELSYRSN VNPKHTFDNF VEGKSNQLAR AAARQVADNP GGAYNPLFLY GGTGLGKTHL 180
  181 LHAVGNGIMA RKANAKVVYM HSERFVQDMV KALQNNAIEE FKRYYRSVDA LLIDDIQFFA 240
  241 NKERSQEEFF HTFNALLEGN QQIILTSDRY PKEINGVEDR LKSRFGWGLT VAIEPPELET 300
  301 RVAILMKKAD ENDIRLPGEV AFFIAKRLRS NVRELEGALN RVIANANFTG RAITIDFVRE 360
  361 ALRDLLALQE KLVTIDNIQK TVAEYYKIKV ADLLSKRRSR SVARPRQMAM ALAKELTNHS 420
  421 LPEIGDAFGG RDHTTVLHAC RKIEQLREES HDIKEDFSNL IRTLSS

Type	Start	End	Confidence
Signal Peptide	1	15	0.71
N-region	1	6
H-region	7	12
C-region	13	15
Cleavage Site	15	16
Non-Cytoplasmic	16	466	0.99