YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|22295677, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.37
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRMRRANKAQ QLSAKLRPAR RNIRLWSQWL LPGLLVKRWL LISAVGVLLA SLGFAISINL  60
   61 TPIYYFLQFL EQFLQSVARF VPSYISGPLL LLGGLALIAW GYARTLGSIT EVLLPEDDKA 120
  121 LVERLLTYRR LGRGPKIVAI GGGTGLSTLL RGLKLYSSNI TAIVTMADDG GSSGRLRREI 180
  181 GVLPPGDIRN CLAALADEEK IVTELFQYRF EAGDGLAGHS FGNLFLTAMT NITGDLERAI 240
  241 ATSSAVLAIR GQVLPATLTD MTLWARLADG RLVHGESNIT AARGKIIEIG CSPPAPKALP 300
  301 RAIQALRDAD YIILGPGSLY TSIIPNLLVP EIAQALAERQ CPCVYVCNIM TQPGETDGYT 360
  361 VGDHVRALDA VTGDRLFDAV LVQKYPPSAA HLERYGQQGS TVVAIDREEL ARQNCRLILA 420
  421 DVMDESTPTV RHHSQKLAAI LMRWYQRVRS L

Type	Start	End	Confidence
Cytoplasmic	1	38	0.70
Transmembrane Helix	39	63	0.76
Non-Cytoplasmic	64	79	0.59
Transmembrane Helix	80	103	0.81
Cytoplasmic	104	133	0.53
Transmembrane Helix	134	150	0.37
Non-Cytoplasmic	151	451	0.78