YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|22537935, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENLLQHKLP VAPFVESTTN WITKTFSGLF DFIQTIGNAL MDWMTKTLLF INPLLFIVLI  60
   61 TIAVFFLAKK KWQLPTFTFI GLLFIYNQGL WEQLINTFNL VLVASLISII IGVPLGIWMA 120
  121 KSDKVKQVVN PILDFMQTMP AFVYLIPAVA FFGIGMVPGV FASVVFALPP TVRFTNLAIR 180
  181 EIPLELIEAS DSFGSTVKQK LFKVELPLAK NTIMAGINQT MMLALSMVVT GSMIGAPGLG 240
  241 REVLSALQHA DIGTGFVSGL SLVILAIVLD RVSQFFNSKP GEKQAKTSKV KKWVGLGALA 300
  301 LFILAALGRI VVNMTSGNEA KGQKVKIAYV QWDSEVASTN VIAEVLKSKG YDVELTPLDN 360
  361 AVMWQTVANG NADFTTSAWL PKTHGQYFNK YKNSLDDLGP HVENVKIGLV VPKYMNVNSI 420
  421 EELSNQADKQ ITGIEPGAGI MKSAKQSLKD YPNLSSWKLL SASTGAMTTT LGKAIKNKDQ 480
  481 VVITGWSPHW MFAKYDLKYL KDPKKSFGGE EHINTIARKN LKKDMPKVYK IIDKFKWTKE 540
  541 DMESIMLDMD KGMEPAKAAQ KWIKNHKKEV SEWTK

Type	Start	End	Confidence
Cytoplasmic	1	47	0.62
Transmembrane Helix	48	68	0.93
Non-Cytoplasmic	69	73	0.47
Transmembrane Helix	74	91	0.73
Cytoplasmic	92	97	0.54
Transmembrane Helix	98	120	0.89
Non-Cytoplasmic	121	140	0.65
Transmembrane Helix	141	168	0.83
Cytoplasmic	169	216	0.78
Transmembrane Helix	217	239	0.83
Non-Cytoplasmic	240	251	0.68
Transmembrane Helix	252	272	0.90
Cytoplasmic	273	292	0.81
Transmembrane Helix	293	312	0.89
Non-Cytoplasmic	313	575	0.92