YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|22776518, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVIDLLRKD IMIMDLKSTD KQSVIEEMIH NLHKYKVIND MDTFKEAILN REAQSSTGLG  60
   61 DGIAMPHAKT SSVNEPAVLF AKSNQGIEYD SLDGQPAHLF FMIAVPDDSN DTHLQTLASL 120
  121 SKLLMESTFV EKLNATSTPE EVQQLFVSES VEDTPKEELQ ADTSQNGSNE RPFIVAVTAC 180
  181 PTGIAHTFMA EDALKKQAKE MNIDIKVETN GSDGAKNQLT SDDIQRANAV IIAASKKVEM 240
  241 ERFNGKHVIE RPVSDGIKKT EELLTKAIHQ DAPIYQGASS SNNSEHEDNQ STSLWGKIYK 300
  301 DLMNGISHML PFVIGGGIIM AISFLFESVL GSESEIFSFL NDLGGNAFNL LIPILAGYIA 360
  361 MSIADRPGLM PGMVAGLLAF NSDAGFIGGL VGGFLAGYIV VGLKYVFKGI PRSLDGIKPI 420
  421 LLYPVFGLFF TGLLMYFIIG PIFSGLNGIM VEFLQGLGTG NAVILGALLG GMMAIDMGGP 480
  481 FNKAAYTFSI GIFTSTGDGS LMAAVMAGGM VPPLAIAVAT TLFKNKFDEA ERKSGVTNYV 540
  541 MGLSFITEGA IPFAAADPLR VIGSSVIGAA IAGGLTQLWN SSIPAPHGGL FVIPLAEGPL 600
  601 FFLLSLLIGT IITALILGFW RKPVTK

Type	Start	End	Confidence
Cytoplasmic	1	304	0.71
Transmembrane Helix	305	326	0.88
Non-Cytoplasmic	327	342	0.66
Transmembrane Helix	343	364	0.85
Cytoplasmic	365	376	0.59
Transmembrane Helix	377	402	0.79
Non-Cytoplasmic	403	419	0.67
Transmembrane Helix	420	443	0.85
Cytoplasmic	444	452	0.53
Transmembrane Helix	453	475	0.83
Non-Cytoplasmic	476	500	0.64
Transmembrane Helix	501	523	0.85
Cytoplasmic	524	560	0.63
Transmembrane Helix	561	579	0.79
Non-Cytoplasmic	580	598	0.74
Transmembrane Helix	599	620	0.93
Cytoplasmic	621	626	0.80