YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|23098578, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRSDHLKQG EKGAWLSIIA YLILASSKLY IASIGSSDGL RADGLNNLTD IVTSVAVLIG  60
   61 LKIARKPPDD IHRYGHYRAE TIASLFAAFI MMFIGLQVIF EAGQKLINSS YTQPDMLTAW 120
  121 TAIFAAGIML CVYRFNLRLS RKIESGSLYA AAMDNKADAL VSIGVFIGII GAQFGLFWLD 180
  181 PLTAGVVGII ICKTAWDIFK DSTITLTDGF DDEKLTEIKE TIDKDPSVLR VDDIKGRIHG 240
  241 NQELLDITIH VDPNLTVAQG HEITDRIEEY LYDKHRISHA LIHIEPFEEQ

Type	Start	End	Confidence
Cytoplasmic	1	12	0.95
Transmembrane Helix	13	32	0.92
Non-Cytoplasmic	33	43	0.75
Transmembrane Helix	44	64	0.84
Cytoplasmic	65	80	0.87
Transmembrane Helix	81	100	0.93
Non-Cytoplasmic	101	116	0.90
Transmembrane Helix	117	137	0.95
Cytoplasmic	138	156	0.94
Transmembrane Helix	157	177	0.88
Non-Cytoplasmic	178	290	0.64