YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|19551627, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	42	0.99
Transmembrane Helix	43	64	0.93
Non-Cytoplasmic	65	79	0.86
Transmembrane Helix	80	100	0.90
Cytoplasmic	101	109	0.83
Transmembrane Helix	110	130	0.94
Non-Cytoplasmic	131	139	0.65
Transmembrane Helix	140	161	0.88
Cytoplasmic	162	168	0.89
Transmembrane Helix	169	191	0.92
Non-Cytoplasmic	192	198	0.89
Transmembrane Helix	199	219	0.95
Cytoplasmic	220	231	0.80
Transmembrane Helix	232	252	0.94
Non-Cytoplasmic	253	260	0.84
Transmembrane Helix	261	280	0.96
Cytoplasmic	281	298	0.90
Transmembrane Helix	299	320	0.93
Non-Cytoplasmic	321	334	0.84
Transmembrane Helix	335	355	0.92
Cytoplasmic	356	364	0.83
Transmembrane Helix	365	384	0.94
Non-Cytoplasmic	385	392	0.83
Transmembrane Helix	393	415	0.91
Cytoplasmic	416	432	0.88
Transmembrane Helix	433	457	0.84
Non-Cytoplasmic	458	512	0.97
Transmembrane Helix	513	533	0.95
Cytoplasmic	534	544	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTHETSVPGP ADAQVAGDTK LRKGRAKKEK TPSSMTPEQQ KKVWWVLSAL MVAMMMASLD  60
   61 QMIFGTALPT IVGELGGVDH MMWVITAYLL AETIMLPIYG KLGDLVGRKG LFIGALGIFL 120
  121 IGSVIGGLAG NMTWLIVGRA VQGIGGGGLM ILSQAIIADV VPARERGRYM GVMGGVFGLS 180
  181 AVLGPLLGGW FTEGPGWRWA FWMNIPLGII AIGVAIYFLD IPKKSVKFRW DYLGTFFMIV 240
  241 AATSLILFTT WGGSQYEWSD PIIIGLIITT IVAAALLVVV ELRAKDPLVP MSFFQNRNFT 300
  301 LTTIAGLILG IAMFGIIGYL PTYLQMVHGI NATEAGYMLI PMMVGMMGTS IWTGIRISNT 360
  361 GKYKLFPPIG MVVTFVALIF FARMEVSTTL WQIGIYLFVL GVGLGLAMQV LVLIVQNTLP 420
  421 TAVVGSATAV NNFFRQIGSS LGSALVGGMF VGNLGTLMEE RMPAAMAQLS PEEQAAMAAQ 480
  481 GGLDSNELTP AIVNQLPTAL HDAFAGSYND ALIPVFYVMM PLIGIALLLL LFIKQEKLRE 540
  541 TTTD