YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|254699921
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	37	0.99
Transmembrane Helix	38	59	0.95
Non-Cytoplasmic	60	83	0.81
Transmembrane Helix	84	106	0.90
Cytoplasmic	107	115	0.86
Transmembrane Helix	116	137	0.90
Non-Cytoplasmic	138	166	0.92
Transmembrane Helix	167	187	0.86
Cytoplasmic	188	213	0.86
Transmembrane Helix	214	236	0.86
Non-Cytoplasmic	237	268	0.90
Transmembrane Helix	269	291	0.89
Cytoplasmic	292	311	0.94
Transmembrane Helix	312	339	0.81
Non-Cytoplasmic	340	363	0.88
Transmembrane Helix	364	385	0.93
Cytoplasmic	386	399	0.76
Transmembrane Helix	400	422	0.86
Non-Cytoplasmic	423	432	0.83
Transmembrane Helix	433	455	0.91
Cytoplasmic	456	495	0.90
Transmembrane Helix	496	515	0.79
Non-Cytoplasmic	516	547	0.88
Transmembrane Helix	548	569	0.92
Cytoplasmic	570	589	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNAGVVKHR RCDIERLMAE TVAVPESKTL RPPRAGRAWL WLSAVVTVLV LFPVLALALE  60
   61 ALQGSAGLWS HLAFTTLPAA FADTVILLSG VGLIAAVLGT SMAWLVTAYD FRGRAVLEWA 120
  121 LLLPLAVPTY IIAYAYLDLL HPVGPVQGAV RFLLGYDSPR QFRLPDIRSM GGCIVLLGFV 180
  181 LYPYVYIPTR AMFLTQSASL IEAARTLGVS RKGIFWRVAL PLARPAVAVG VSLALMETLN 240
  241 DVGAAEFLGV RTLTVSIYTT WITRSDLPGA AQLALALLFL VVALVSIERW ARRKQRFASN 300
  301 IRHSRGFDPL KVSGFHGAWL FCLCAIPVMI GFVLPAFYLA VEAIKRMRFA GISPRLAGEA 360
  361 LNTVALASVA TVLVLICGML VAYAVRLFPA AFSRWCYRFS TMGYAAPGTV IAIGILVVSG 420
  421 GFDRLLNQFT MQFFGFSAGL VLIGTGAAVV YAYVVRFLAI SAGGIDAGLE RIPLSLDHAS 480
  481 RTLGRSVTET FRAVHLPLSR TAIVAAGLLV FVDCVKELPA TLLLRPLNVE TFATHLYGEA 540
  541 ARGTYEEASI AALAIVITGI LPVILLARVG RRLGRKEKLS APQGPVRAG