YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24216321, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.85
Transmembrane Helix	9	28	0.91
Non-Cytoplasmic	29	36	0.83
Transmembrane Helix	37	56	0.97
Cytoplasmic	57	76	0.86
Transmembrane Helix	77	97	0.95
Non-Cytoplasmic	98	116	0.93
Transmembrane Helix	117	138	0.91
Cytoplasmic	139	145	0.81
Transmembrane Helix	146	167	0.90
Non-Cytoplasmic	168	179	0.89
Transmembrane Helix	180	202	0.88
Cytoplasmic	203	216	0.95
Transmembrane Helix	217	239	0.85
Non-Cytoplasmic	240	252	0.87
Transmembrane Helix	253	276	0.90
Cytoplasmic	277	284	0.81
Transmembrane Helix	285	303	0.83
Non-Cytoplasmic	304	306	0.64
Transmembrane Helix	307	326	0.86
Cytoplasmic	327	334	0.71
Transmembrane Helix	335	356	0.91
Non-Cytoplasmic	357	367	0.63
Transmembrane Helix	368	389	0.93
Cytoplasmic	390	781	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNRIANRIV LILFLGINLP LFSESPALEL SKTVDPIWLI LCAALVFFMQ AGFLMLETGL  60
   61 SRLKNTINVA VKNLMDYIVG TIAFFSVGFA LMFGLSYEGW IGTNHFFLTG LKTGKDFSFF 120
  121 LFQVAFMGTA ATIVSGAVAE RIKFSAYLIV SVVVSLFIYP VFGHWTWGGG WIAKIGFVDF 180
  181 AGSTVVHSLG GWIALAGVIV LGPRKDKFKE DGTPRKIHGH NLTFSVLGVF ILWFGWFGFN 240
  241 GGSALSFTDQ VPLIILNTSL AGSVGGIFAI TFSWIFYRVA SVEDCMNGVL GGLVAITAGC 300
  301 HAFQPYASLI VGALAGISVV ITSWVLEKIL KLDDVVGAFP VHGVCGIIGT LLLPILSENQ 360
  361 DIRIYPQFIG VLTCSFWAFG LGMILFLLLK ISIGIRVNEE FEEKGLNVTE HGAGSSWIDL 420
  421 IHSLKDLAKG GGDLTRKIHV DSGTEAGAIA FLMNRYLANL GQMIYTIKEK SIELEYSSSE 480
  481 ISVAWGKMSQ GIQQQAANLG EVTSIFDSFR ESFQTISSSA AQQKEMETSA SELLNELVFG 540
  541 FQKFDSDLKN SSEKSEESVK AIDLSRKELN QLETDINDIG SSAKKVEGLV KLLNDISAKL 600
  601 GMLSINASIE AARSGAAGKG FGVVAEEISK LASSTQESTK KASEILGEIQ STVSRGKTTV 660
  661 QTSVEFFKNL TEEFRFLAET YITIRKSSLH YSNLIGNLNR LNTSITNQSE IIMTDIDKRF 720
  721 SEIGNLYESV DLINGAFHEI SAQSEELNAT GEFLKQLAEI LNSLVRNFRV EQNSSQELIP 780
  781 G