YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24345423, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.88
Transmembrane Helix	21	43	0.90
Non-Cytoplasmic	44	54	0.69
Transmembrane Helix	55	79	0.82
Cytoplasmic	80	86	0.68
Transmembrane Helix	87	110	0.89
Non-Cytoplasmic	111	137	0.81
Transmembrane Helix	138	160	0.88
Cytoplasmic	161	169	0.76
Transmembrane Helix	170	190	0.82
Non-Cytoplasmic	191	200	0.81
Transmembrane Helix	201	221	0.93
Cytoplasmic	222	233	0.89
Transmembrane Helix	234	257	0.88
Non-Cytoplasmic	258	309	0.90
Transmembrane Helix	310	338	0.77
Cytoplasmic	339	358	0.90
Transmembrane Helix	359	379	0.94
Non-Cytoplasmic	380	414	0.80
Transmembrane Helix	415	436	0.87
Cytoplasmic	437	453	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVQWHPSLPL EQTQKAGKKL FGAPPFILSA SFALLILVGT CLLKLPIATE TPISWLQSLF  60
   61 TVTSAVTVTG LVVVDTGTVF TPFGQVIVAL LIQCGGLGLM TFAIVTLIAL GGKIGFLQQT 120
  121 VAKEAFNQTD TSTLVSTAKA VLVFSLLVEA VGMLILSVHW SDELGWQTSL FHGFFYTISA 180
  181 FNNAGFALSA DSLMPYVADP VVNLTITGLF IVGGLGFSVW IDLRRHKRWS KLTVYSRMMI 240
  241 TGTILINAVA LIAIYLIEYN NPNTLAPLSE LGKWLASWFQ AVTPRTAGFN TLPIDKLEDG 300
  301 SALLILVLMF IGGGSLSTAS GIKVVTFMVL ILATYSYLRR DEAAYAFKRE IPKETISKAL 360
  361 ALTMISIGVT WLAIFALVLT EKAPILDIAF EAVSAFGTVG LSRGLTSNLS GAGQGIIIFM 420
  421 MYMGRLGPLM LAYFLANPRV KKLRYAETKL AIG