YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24346305, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLSLLFTLA LIHCVALVSP GPDFAIMVKI ATSQPRNTAI ATAVGVSVAI LAHTILSLTG  60
   61 VSLVIKSSHT LYLLVQLLGA SYLAWMGFGA LKATIAFFRK PKRLLKGEEA ESSVATEAQA 120
  121 NTGDNSQTKA EKSLSPRQGF MTGLYTNLLN PKALVFFLTL FSALITPSVT PATKVAAALV 180
  181 LFVLSLIWFG FLALMLSKAK VQQKMQRITP IIDAVIGVIF MSVALAIVSN LLLV

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.78
Transmembrane Helix	7	27	0.83
Cytoplasmic	28	38	0.80
Transmembrane Helix	39	61	0.87
Non-Cytoplasmic	62	72	0.78
Transmembrane Helix	73	96	0.87
Cytoplasmic	97	147	0.94
Transmembrane Helix	148	166	0.91
Non-Cytoplasmic	167	174	0.71
Transmembrane Helix	175	196	0.93
Cytoplasmic	197	208	0.90
Transmembrane Helix	209	232	0.87
Non-Cytoplasmic	233	234	0.85