YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24372411, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNKVLMHQN KLRTLKLSVI AISIALLSGC GALMRSDFEP PALQVPEQWQ HTAVNSQVSL  60
   61 DPWWQKFNQP ELNQLISQVL SSNNDLTIAT LTLQKARLQA GLARDELYPQ LSSNNAASVN 120
  121 KPLEGGSSSK AYKANLSVSY EVDLWGKVSA NIDQAQWTAL ASVEDRESTA HSLVATTASL 180
  181 YWQIGYLHQR IELSNKSIEY SRQTLALTER QYASGAVTEL NVLESLRSLA GQEAAHSQLL 240
  241 QQLVEAENAL AILLNRAPGQ VAVEIKQLPD SAVPEIGVGI PADLIGRRPD VKAALYQLRS 300
  301 ALASKNATYA SYFPSLSLTG SVGESTSELK ELLRNPVGSL GAGLMLPFLQ WNQMQINNDL 360
  361 ADIDYQTAIV NYRKTLYSAF EDVDNAISAK QQYAYQGEKL EQQFSAAAQA EAIYESQYRH 420
  421 GAIGIQNWID AQENRRSAEA ALLENRYNQL TAQATLYQAL GGSDIAPLLA DN

Type	Start	End	Confidence
Signal Peptide	1	32	0.91
N-region	1	23
H-region	24	29
C-region	30	32
Cleavage Site	32	33
Non-Cytoplasmic	33	472	0.99