YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24346385, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.56
Transmembrane Helix	10	32	0.90
Non-Cytoplasmic	33	38	0.47
Transmembrane Helix	39	61	0.85
Cytoplasmic	62	67	0.49
Transmembrane Helix	68	92	0.81
Non-Cytoplasmic	93	124	0.57
Transmembrane Helix	125	150	0.81
Cytoplasmic	151	156	0.47
Transmembrane Helix	157	179	0.84
Non-Cytoplasmic	180	192	0.65
Transmembrane Helix	193	212	0.89
Cytoplasmic	213	221	0.74
Transmembrane Helix	222	241	0.88
Non-Cytoplasmic	242	250	0.68
Transmembrane Helix	251	269	0.93
Cytoplasmic	270	294	0.85
Transmembrane Helix	295	314	0.87
Non-Cytoplasmic	315	357	0.72
Transmembrane Helix	358	377	0.94
Cytoplasmic	378	394	0.61
Transmembrane Helix	395	414	0.91
Non-Cytoplasmic	415	421	0.53
Transmembrane Helix	422	445	0.86
Cytoplasmic	446	516	0.68
Transmembrane Helix	517	538	0.88
Non-Cytoplasmic	539	545	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTWTQTYTPL GSLWLTAIVA LLPIVFFFLA LTVLKLKGHI AGALTLLIAL AVAIITYKMP  60
   61 VSIALASAIY GFSYGLWPIA WIIITAVFLY KITVKTGQFE IIRSSVISVT EDQRLQMLLV 120
  121 GFSFGAFLEG AAGFGAPVAI TAALLVGLGF NPLYAAGLCL IANTAPVAFG AMGIPIIVAG 180
  181 QVSSLDPFHI GQLAGRQLPI LSIIVPFWLI AMMDGIRGIR QTWPATLVAG VSFAVTQFLT 240
  241 SNFIGPELPD ITSALVSLIC LTLFLKVWQP KEIFTFSGMK QRAVTPKSTF SNGQIFKAWS 300
  301 PFIILTAIVT LWSIKDVQLA LSFATISIEV PYLHNLVIKT APIVAKETPY AAIYKLNLLG 360
  361 AVGTAILIAA MISIVVLKMS ISNALTSFKD TLIELRFPIL SIGLVLAFAF VANYSGLSST 420
  421 LALVLAGTGV AFPFFSPFLG WLGVFLTGSD TSSNALFGAL QANTANQIGV TPELLVAANT 480
  481 TGGVTGKMIS PQSIAVACAA TGLAGKESDL FRFTLKHSLF FCTFIGVLTV LQAYIVPWTL 540
  541 VFFTK