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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|24372448, gi|...
Protein type: Transmembrane
Type Confidence: 0.78
Topology Confidence: 0.69
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKSKLRTFR SKILSHIALP LILIMATVYG ITSWFNYLSI EKRLYENLAQ ESSHSASRLQ  60
   61 FLLEHAQANT QGLSDFIGLL ADKDDINNPE KLKTVLTNRI QRNPDFFGSA IAFKPNTFPN 120
  121 KKLFSPYVYR SGSGFNYLDI GADGYDYTDG NWDWWSKAIN QVGGYWSKAY FDEGAGNVLM 180
  181 ITYAVPFGVQ PDYFGVTTVD LALDRLPEQL GIAPSRLVVL DDQGRLIFHS DKEKVLAASS 240
  241 SGWLDKQNIK NIAFATLLND GQAGQASFVD DKGTVYLASV AEVAKLKWRV VVMVPKHELF 300
  301 ASLLDDIASA ILNLSLLTLL LLLTCYIAAK RLTRPLEALE SGILAFGQGK AQELTIPKGA 360
  361 VSEIVTLSET FNQMAALLAE REQAILDSRG NRFARLIDGM SDKSFYCSLD PDGQLAQVSE 420
  421 GVTKVLGIPP ELLKRKYQRL FSANPLNEKN WEYTDLALKG QNVPPHQIEL VDAKGQARRL 480
  481 DVFMQPLVSD TGELMSVEML FTDVTEQFSA AAWSNAVLEA APEAMLIVDQ NGQIVFSNSR 540
  541 CQQLFGYDAK AMLALQIETL LPEELRHLHT GERLDFLREG RDRPMASARH VRALKSDGGE 600
  601 FVAEIALSIL PSDFDGRRQV AASIRDMTQK IMVEQKIRDS ELRFRGLVTN IPGAVYRTRI 660
  661 GEVWVIEYVS DNIAEITGYA ASQFIENRQR TFTSLILEDD RALCNQHIER ALAQQETFEV 720
  721 EYRIRHRDGS IRWVHEKGKA SYSEEGLPLW FDGSIDDVTE SKLAIDEIEA SRQQLTNITE 780
  781 SIPCTVYQLR WVSPTDRSFT FLSGAALAML GLHREELLRD FNIIAERIFD EERPEVISAL 840
  841 AGKSDDQLRW IREFRYRHPN GGIRWMEAGA SGHYADDGSI IWNGYVMDVT ERKSIEEELA 900
  901 VSEAHFKALF DGATIGIVNV DIKGLILDCN YQFCEDMGLS RDELRSTPIF DVLSAQDKDV 960
  961 AKAQFKELVE GKIDHYRGER SFVRPSGEPL WMTVNVSTLL DSQNQFESAV VSMVDMTELK1020
 1021 LLSDELLVAK DEADAASKAK GDFLANMSHE IRTPMNAIIG MSQLCLQTQL DKKQKNYLEK1080
 1081 IERASQSLLS IINDILDFSK IEAGKLDIEN VSFQLDTMLE DLSDMFSERA AQKQIELLFA1140
 1141 VAPNVPRHLL GDPLRLGQVL INLMNNAIKF TERGEVLLSL SLVEQQNDDV VLRFSVRDSG1200
 1201 IGLTQEQQSK LFKSFTQADT STTRKYGGTG LGLAISKQLV ELMGGSIGVE SQLGHGSTFF1260
 1261 FTVKLCISSG QKLFVGQELD GMSILVADDN ATARDIMRTT LESMGFNVDT VRSGDEAIMR1320
 1321 CSQQEYAVAL IDWKMPNLDG IETAKQIKQQ TKNAPRILMV SAHANQDFLT QIEQLGLAGY1380
 1381 ISKPISASRL LDGIMNALGR SGILPVRRHQ DNIAPELLLP LKGKRILLVE DNEMNLEVAT1440
 1441 EFLEQVGIIL SIATNGQIAL DKLAQQSFDL VLMDCQMPVM DGYQATKAIR QRPELAQLPV1500
 1501 IAMTANAMAG DKEMCLRAGM NDHIAKPIEV NLLYQTLLKY LGAPVPSLEN AEFVVNESLN1560
 1561 PLNLDVESVV KWPEHPELDI DRGLQLVQNS KRLYQRIFDR FATSQRNVVD QINKALASNK1620
 1621 REDAVRMAHT LKGLAGNLSS SKLAELARQL ELHLSENADY QVELDQIQIL VASICEAIEK1680
 1681 AKPQFEETST STAEHLPKDA LIAALKQLRQ SLEDADSDAV TQMDALKPQM SALLWQQLSP1740
 1741 ALTMINQYQF DEAVDLIDEV LAKLT

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