YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24372880, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	37	0.97
Transmembrane Helix	38	60	0.93
Non-Cytoplasmic	61	77	0.94
Transmembrane Helix	78	97	0.90
Cytoplasmic	98	119	0.87
Transmembrane Helix	120	141	0.74
Non-Cytoplasmic	142	177	0.75
Transmembrane Helix	178	200	0.90
Cytoplasmic	201	208	0.71
Transmembrane Helix	209	231	0.90
Non-Cytoplasmic	232	248	0.80
Transmembrane Helix	249	271	0.92
Cytoplasmic	272	281	0.79
Transmembrane Helix	282	304	0.90
Non-Cytoplasmic	305	320	0.76
Transmembrane Helix	321	343	0.91
Cytoplasmic	344	350	0.65
Transmembrane Helix	351	373	0.89
Non-Cytoplasmic	374	379	0.64
Transmembrane Helix	380	403	0.90
Cytoplasmic	404	410	0.72
Transmembrane Helix	411	431	0.93
Non-Cytoplasmic	432	574	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLTINKAAI QDAITTAKKY LTNELRDHLS QAKISAQLCL LALLFAIFAS CVILLFRLLL  60
   61 LWANHYTQIE TLDFTGNIAD WRALLPLFGA LLIWFVAKLG SKRYNRMGIA YVLHRVKLHY 120
  121 GKIPLQSAAG QFFQALFALG TNFSVGREGP AIHLGAVSAS VLAEKFNLPD NSVRIMCASG 180
  181 IAAGIAATFN APLAAVIFVI EVIVREYKVH YFFPIMLSAI CGAVSSQLVF GNVHEFDRIQ 240
  241 VIHIPLDHYP ILAIGGIVLG CAAAFFNYAL IKVTATGQNW PLIYRLLLAG SITTLIGLIL 300
  301 PQALGTGDLA ISEAISEHPS LLLLIALLVA KIVATIAAIG LGIPGGLIGP LYGIGALIGA 360
  361 ILALVSAILF PSIAPYVGLY TVIGMTAMMG VCLSAPLAAL VALLEMTNDA SIILPAMFVT 420
  421 IPAFLIAYQG FKTNSIFFKQ LEIMGLGYKV APVNLALQKK GVRALMDKRF VIVNNNDELL 480
  481 LEVLKRAEGR PVLVRNADGV IEMLSLEMQS FDDNVTLSRH PMQGLSDTKT LDEVYSILSP 540
  541 KRSGEVFIYQ DTADNVVGVI SWSNLQQEIR SGQV