YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24347439, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.81
Transmembrane Helix	5	23	0.93
Cytoplasmic	24	29	0.73
Transmembrane Helix	30	50	0.84
Non-Cytoplasmic	51	56	0.83
Transmembrane Helix	57	75	0.94
Cytoplasmic	76	84	0.76
Transmembrane Helix	85	107	0.92
Non-Cytoplasmic	108	114	0.79
Transmembrane Helix	115	134	0.94
Cytoplasmic	135	145	0.90
Transmembrane Helix	146	168	0.88
Non-Cytoplasmic	169	177	0.78
Transmembrane Helix	178	198	0.91
Cytoplasmic	199	213	0.82
Transmembrane Helix	214	233	0.86
Non-Cytoplasmic	234	237	0.57
Transmembrane Helix	238	256	0.86
Cytoplasmic	257	269	0.78
Transmembrane Helix	270	289	0.90
Non-Cytoplasmic	290	294	0.70
Transmembrane Helix	295	314	0.93
Cytoplasmic	315	326	0.73
Transmembrane Helix	327	348	0.90
Non-Cytoplasmic	349	356	0.72
Transmembrane Helix	357	375	0.92
Cytoplasmic	376	648	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEHGFLIQIL LMLVIAIIAI ALLRRIGLPA ILAYLLTGVL SGPSGFHWFT QQQMQSVAEL  60
   61 GVVLLMFTLG LEFSVPRLWA MRRTVFGLGS AQVFVTTVLT MLVALACGLN WRESLVIGAA 120
  121 IALSSTAIVL KLLNELGWLR RRHGELSVSV LLFQDLAVVP LLILLPLLGQ SDEPLVLASI 180
  181 AWALLKGILA FFFLMALGKW ALPRLFDEVA RSRSNELFVL STLVVALVTG AFTQWLGLSM 240
  241 ALGAFMAGML LGESQYRRQL EADIRPFRDL LMGLFFISIG MMLNFALVIQ FWWQILLILL 300
  301 AVVFGKALII HGLLRLVGEP FRIAISTALS LAQVGEFSFV VLALAVSYGL LSNETSTMLV 360
  361 MVAVLSMSIA PWLVRHCMDI AKWLLGIRQS GHVDDVVPVI TDDHDLVVIL GYGRVGQTIA 420
  421 RFLKTEAVPY LVLDLDPTRV YEARRAGEPI YFGDVCKRAI LKQIGIKHAK MIVITFCESR 480
  481 SVEEALPLCR QLAPEANILV RTRDDSELDL LQKAGANQVI PETLEGSLML VSQVLHQCGV 540
  541 PLARILKRLE SERRNHYQFL HGFFSGTETD FTLESLHAVL LHRGADAVGK QVADIDWELL 600
  601 RVELRAIRRS GQEIEHPASD WVFRAGDILL IVGKPRRLEK AEAKLLQG