YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SO2054
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNEKPQFIK SKAAVAWGPR QPLKIEEVDV MLPKAGEVLV RIVATGVCHT DAFTLSGDDP  60
   61 EGVFPAILGH EGGGIVEQVG EGVTSVQVGD HVIPLYTPEC GECKFCLSGK TNLCQKIRAT 120
  121 QGKGLMPDGT TRFYKDGQPI FHYMGCSTFS EYTVLPEISL AKVNKTAPLK EICLLGCGVT 180
  181 TGMGAVMNTA KVEAGATVAI FGLGGIGLSA IIGATMAKAS RIIAIDINES KFELARKLGA 240
  241 TDCINPKNFD KPIQEVIVEM TDGGVDYSFE CIGNVNVMRS ALECCHKGWG ESVIIGVAGA 300
  301 GQEISTRPFQ LVTGRVWRGS AFGGVKGRSQ LPKIVEQYLA GEFKLDDFIT HTMGLEQVNE 360
  361 AFDLMHEGKS IRSVIHFDK

Type	Start	End	Confidence
Cytoplasmic	1	171	0.88
Transmembrane Helix	172	187	0.82
Non-Cytoplasmic	188	195	0.65
Transmembrane Helix	196	217	0.85
Cytoplasmic	218	379	0.86