YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24349388, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELLLDTLMQ TIASYMWPLF RVASMLMVMV VFGAATTPTR VRLLLAIAIT LAIAPVLPPV  60
   61 KDAQLFSLSA VFITAQQIII GVAMGFVTQM VMQTFVLTGQ IIGMQTSLGF ASMVDPSSGQ 120
  121 QTPVIGNFFL LLATLIFLAV DGHLLMIRML VASFDTLPIS NVGLTLTSYR SLAEWGSYMF 180
  181 GAALTMSLSA IIALLLVNLS FGVMTRAAPQ LNIFSIGFPI TMIGGLLILW LTLTPVMAHF 240
  241 DEVWASAQLL LCDILGLQCQ ADGIL

Type	Start	End	Confidence
Cytoplasmic	1	16	0.53
Transmembrane Helix	17	36	0.91
Non-Cytoplasmic	37	40	0.47
Transmembrane Helix	41	60	0.83
Cytoplasmic	61	67	0.44
Transmembrane Helix	68	102	0.73
Non-Cytoplasmic	103	122	0.39
Transmembrane Helix	123	145	0.86
Cytoplasmic	146	150	0.44
Transmembrane Helix	151	169	0.49
Non-Cytoplasmic	170	178	0.66
Transmembrane Helix	179	202	0.88
Cytoplasmic	203	210	0.75
Transmembrane Helix	211	234	0.87
Non-Cytoplasmic	235	265	0.70