YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24350367, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKTFRQPHA LAAMVIAMLM AQLSGCATTS AQTSPTEFGA GLPEAEDHSE SAEPQSVEAE  60
   61 VIDERYADVW EKIQHARTID VHDDAEVRKQ RNFFDDKQKF MTQVTQRAEP FLYYIVSQLE 120
  121 ARNMPLELAL LPIVESGYNP LAQANGPAGL WQMIPATGRN FGLTINSAYD GRKDALASTD 180
  181 AVLDYLQHLY NTLGNDWINA VAGYNSGELV IKAAIDRNKA KGKPTDFWSL NIPARQVQTV 240
  241 PKWLAFIQII REPSHYNLKV MPIANRPFLE RLPAPNGVEI SQIANAAGLT KAEFKTYNPG 300
  301 YRQSVIPSKG KYQIALPIEN IGHYQENQHK LYAQKRYDSQ TYIVKSGDSL GTIAAKFDLS 360
  361 VKELKQANNL TSDRLKIGQE LTLLTPMAAN DNEPEPVKTK ANTDKSSTKA NASSTKATSS 420
  421 KSTDKPVAKA KTYKVKSGDS LDKIARKSKV KLADLMKWNQ LNAKSIIKPG QELKISE

Type	Start	End	Confidence
Signal Peptide	1	31	0.96
N-region	1	22
H-region	23	28
C-region	29	31
Cleavage Site	31	32
Non-Cytoplasmic	32	477	0.99