YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24375905, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVIIGALLF ALYRQLIIEQ QYQVTQYLES ETQRYQQLAL TVDRRSFAAQ IRAADPQTAL  60
   61 IAWRNSYDMV GALSFMPEGM PMLPQTRDFP ILTGGPDKLH ILTGGLVMTR YGPVLIATRT 120
  121 DNLATLIDKF ISAAATAVML TIVLTLALGY LFSKAILRRL VQYNRLSEQI ERGHYDTRLP 180
  181 LSWRQDEFDM LALQFNNVLD ILENNLMAVR GVTDNIAHDL RTPLSHIRIG IEELATKSPD 240
  241 EISEGCAILT EELDHCLATF DAMLSLTRIE EGQQTLDLQE LSLAQLCTDL LEMADAVAES 300
  301 NEQTLSLSLL ADHKVHGDKY LLFQALYNLV DNAMKYSGQG ARIDIIQSGA QIKICDNGPG 360
  361 IPDDSKERVF ERLVRLDPSR HLQGTGLGLS MVKAILSRHN AQITLSDNHP GLVVTIQF

Type	Start	End	Confidence
Cytoplasmic	1	129	0.68
Transmembrane Helix	130	152	0.85
Non-Cytoplasmic	153	418	0.63