YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24376696, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.96
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSKKVRKAV IPAAGLGTRF LPATKALAKE MLPIVDKPTI QFIVEEALKS GIEDILVVTG  60
   61 KSKRSIEDHF DSNFELEYNL EQKGKTDLLK LVNDTTAINL HFIRQSHPRG LGDAVLQAKA 120
  121 FVGNEPFVVM LGDDLMDITD DKAIPLTRQL MNDYEETHAS TIAVMEVPHE DVSAYGVIAP 180
  181 QGEGVSGLYS VDTFVEKPAP KEAPSNLAII GRYLLTPEIF TILETQEPGA GNEVQLTDAI 240
  241 DTLNKTQRVF AREFKGKRYD VGDKFGFMKT SIDYALKHPQ VKEDLKAYII ELGKKLDQKS 300
  301 TQKNSD

Type	Start	End	Confidence
Signal Peptide	1	28	0.92
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	306	0.99