YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|254997399
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLILQGKLP VADWIEDLTN WLTHTFSGLF NLIQSVGNFI MDGITNTLLF VNPLLLIVLV  60
   61 TLAAFFLARK KWTLPTFTLL GLLFIYNQSL WDDLVNTFTL VLVSSFISIV IGIPLGIWMA 120
  121 KNNTVKQIIN PILDFMQTMP AFVYLIPAVA FFGIGIVPGV FASVIFALPP TVRFTNLAIR 180
  181 EIPTELIEAA DAFGSTSRQK LFKVELPLAK NTIMAGINQT IMLALSMVVT GSMIGAPGLG 240
  241 RGVLSALQHA DIGSGFVNGL ALVILAIVID RFSQTANQRT KDANQKKNKT NTIIALAALV 300
  301 LFVFAGIARL FVQGQSAGGG QKIKLSYVEW DSEVASTNVL AQVLKDQGYK VEMTPLDNAV 360
  361 MWQSVSKGET DAMVSAWLPN THGDQYKKYK NNIVDLGPNL KGVKLGLAVP TYMKNVNRIE 420
  421 DLTDQADKKI TGIEPGAGIM KAANKALKSY SNLSDWKLVS ASTGAMTTAL DQAYKNKKDI 480
  481 VVTAWSPHWM FAKYKLKYLK DSKKDFGSIE SIHSITRKGL KKDIPKANKI IDKFNWTQKD 540
  541 MEAVMLDINN GMSPEKAAKK WIKEHPKKVA SWTSNK

Type	Start	End	Confidence
Cytoplasmic	1	20	0.69
Transmembrane Helix	21	41	0.69
Non-Cytoplasmic	42	47	0.55
Transmembrane Helix	48	68	0.92
Cytoplasmic	69	96	0.41
Transmembrane Helix	97	120	0.87
Non-Cytoplasmic	121	140	0.59
Transmembrane Helix	141	168	0.83
Cytoplasmic	169	216	0.81
Transmembrane Helix	217	239	0.82
Non-Cytoplasmic	240	249	0.74
Transmembrane Helix	250	269	0.91
Cytoplasmic	270	289	0.86
Transmembrane Helix	290	312	0.88
Non-Cytoplasmic	313	576	0.96