YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24377555, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTPADNLKL ARRGPTIAIS VYLTLALAKL ISGHLLHSAS LTADGFNNVS DIVANVTILI  60
   61 GLYLASKPAD KDHKFGHWKI EDLASLITSF IMFTVGFQVL LETINGIIHN SRAQIDPYGA 120
  121 LVGIISAIVM FILYLYNKQL SKKLKSGALM AAAKDNLSDA LTSLGTSIAI LASTFNLLII 180
  181 DKMTAVIITL LILKTAYDIF MTSAFSLSDG FDDKQLQEYE KAILEIPKIS AVKSQRGRTY 240
  241 GSNVYLDLVL EMNPDLSVYE SHAITERVEK LLHEQFNVYD IDIHVEPAAI PEDEIFENVY 300
  301 HKLYKYEKII LTKTSDYEQL LTDSFILIDE KGHVNAKAAF LKGRSSEAKH FNSFKMLSIS 360
  361 QKTKLITYEL DSYRHTSLWR RHERWQIIYH QVSPIL

Type	Start	End	Confidence
Cytoplasmic	1	15	0.91
Transmembrane Helix	16	37	0.85
Non-Cytoplasmic	38	47	0.75
Transmembrane Helix	48	66	0.88
Cytoplasmic	67	82	0.86
Transmembrane Helix	83	101	0.91
Non-Cytoplasmic	102	116	0.71
Transmembrane Helix	117	136	0.96
Cytoplasmic	137	156	0.91
Transmembrane Helix	157	180	0.67
Non-Cytoplasmic	181	396	0.52