YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|26106965, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSLNIKQGS EAHFPEYPLA SPSNNEIDLL NLIEVLWRAK KTVMAVVFAF ACAGLLISFI  60
   61 LPQKWTSAAV VTPPEPVQWQ ELEKTFTKLR VLDLDIKIDR TEAFNLFIKK FQSVSLLEEY 120
  121 LRSSPYVMDQ LKEAKIDPLD LHRAIVALSE KMKAVDDNAS KKKDESALYT SWTLSFTAPT 180
  181 SEEAQKVLAG YIDYISALVV KESIENVRNK LEIKTQFEKE KLAQDRIKTK NQLDANIQRL 240
  241 NYSLDIANAA GIKKPVYSNG QAVKDDPDFS ISLGADGIER KLEIEKAVTD VAELNGELRN 300
  301 RQYLVEQLTK TNINDVNFTP FKYQLRPSLP VKKDGQGKAI IVILSALVGG MVACGGVLLR 360
  361 HAMASRKQDA MMADHLV

Type	Start	End	Confidence
Cytoplasmic	1	41	0.92
Transmembrane Helix	42	61	0.90
Non-Cytoplasmic	62	338	0.95
Transmembrane Helix	339	359	0.93
Cytoplasmic	360	377	0.83