YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|227886132, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKSKMIVRT KFIDRACHWT VVICFFLVAL SGISFFFPTL QWLTQTFGTP QMGRILHPFF  60
   61 GIAIFVALMF MFVRFVHHNI PDKKDIPWLL NIVEVLKGNE HKVADVGKYN AGQKMMFWSI 120
  121 MSMIFVLLVT GVIIWRPYFA QYFPIQVVRY SLLIHAAAGI ILIHAILIHM YMAFWVKGSI 180
  181 KGMIEGKVSR RWAKKHHPRW YREIEKAEAK KESEEGI

Type	Start	End	Confidence
Cytoplasmic	1	15	0.99
Transmembrane Helix	16	38	0.90
Non-Cytoplasmic	39	54	0.89
Transmembrane Helix	55	76	0.92
Cytoplasmic	77	116	0.96
Transmembrane Helix	117	138	0.91
Non-Cytoplasmic	139	151	0.90
Transmembrane Helix	152	175	0.89
Cytoplasmic	176	217	0.99