YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ARNC_ECO45
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFEIHPVKKV SVVIPVYNEQ ESLPELIRRT TAACESLGKE YEILLIDDGS SDNSAHMLVE  60
   61 ASQAEGSHIV SILLNRNYGQ HSAIMAGFSH VTGDLIITLD ADLQNPPEEI PRLVAKADEG 120
  121 YDVVGTVRQN RQDSWFRKTA SKMINRLIQR TTGKAMGDYG CMLRAYRRHI VDAMLHCHER 180
  181 STFIPILANI FARRAIEIPV HHAEREFGES KYSFMRLINL MYDLVTCLTT TPLRMLSLLG 240
  241 SIIAIGGFSI AVLLVILRLT FGPQWAAEGV FMLFAVLFTF IGAQFIGMGL LGEYIGRIYT 300
  301 DVRARPRYFV QQVIRPSSKE NE

Type	Start	End	Confidence
Cytoplasmic	1	237	0.79
Transmembrane Helix	238	261	0.88
Non-Cytoplasmic	262	269	0.62
Transmembrane Helix	270	295	0.81
Cytoplasmic	296	322	0.73