YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|26109488, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.95
Transmembrane Helix	12	31	0.89
Non-Cytoplasmic	32	53	0.79
Transmembrane Helix	54	75	0.92
Cytoplasmic	76	83	0.88
Transmembrane Helix	84	104	0.91
Non-Cytoplasmic	105	110	0.66
Transmembrane Helix	111	131	0.91
Cytoplasmic	132	141	0.84
Transmembrane Helix	142	164	0.92
Non-Cytoplasmic	165	169	0.87
Transmembrane Helix	170	192	0.90
Cytoplasmic	193	203	0.92
Transmembrane Helix	204	223	0.94
Non-Cytoplasmic	224	236	0.79
Transmembrane Helix	237	254	0.98
Cytoplasmic	255	272	0.88
Transmembrane Helix	273	294	0.92
Non-Cytoplasmic	295	305	0.79
Transmembrane Helix	306	327	0.92
Cytoplasmic	328	338	0.78
Transmembrane Helix	339	356	0.97
Non-Cytoplasmic	357	371	0.87
Transmembrane Helix	372	393	0.91
Cytoplasmic	394	482	0.68
Transmembrane Helix	483	501	0.95
Non-Cytoplasmic	502	515	0.60

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVMQQQKPL EGAQLVIMTI ALSLATFMQV LDSTIANVAI PTIAGNLGSS LSQGTWVITS  60
   61 FGVANAISIP LTGWLAKRVG EVKLFLWSTI AFAIASWACG VSSSLNMLIF FRVIQGIVAG 120
  121 PLIPLSQSLL LNNYPPAKRS IALALWSMTV IVAPICGPIL GGYISDNYHW GWIFFINVPI 180
  181 GVAVVLMTLQ TLRGRETRTE RRRIDAVGLA LLVIGIGSLQ IMLDRGKELD WFSSQEIIIL 240
  241 TVVAVVAICF LIVWELTDDN PIVDLSLFKS RNFTIGCLCI SLAYMLYFGA IVLLPQLLQE 300
  301 VYGYTATWAG LASAPVGIIP VILSPIIGRF AHKLDMRRLV TFSFIMYAVC FYWRAYTFEP 360
  361 GMDFGASAWP QFIQGFAVAC FFMPLTTITL SGLPPERLAA ASSLSNFTRT LAGSIGTSIT 420
  421 TTMWTNRESM HHAQLTESVN PYNPNAQAMY SQLEGLGMTQ QQASGWIAQQ ITNQGLIISA 480
  481 NEIFWMSAGI FLVLLGLVWF AKPPFGAGGG GGGAH