YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24114722, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTCMEAWAM NKRDAINHIR QFGGRLDRFR KSVGGSGDGG RNAPKRAKSS PKPVNRKTNV  60
   61 FNEQVRYAFH GALQDLKSKP FATFLTVMVI AISLTLPSVC YMVYKNVNQA ATQYYPSPQI 120
  121 TVYLQKTLDD DAAAGVVAQL QAEQGVEKVN YLSREDALGE FRNWSGFGGA LDMLEENPLP 180
  181 AVAVVIPKLD FQGTESLNTL RDRITQINGI DEVRMDDSWF ARLAALTGLV GRVSAMIGVL 240
  241 MVAAVFLVIG NSVRLSIFAR RDSINVQKLI GATDGFILRP FLYGGALLGF SGALLSLILS 300
  301 EILVLRLSSA VAEVAQVFGT KFDINGLSFD ECLLLLLVCS MIGWVAAWLA TVQHLRHFTP 360
  361 E

Type	Start	End	Confidence
Cytoplasmic	1	80	0.74
Transmembrane Helix	81	104	0.66
Non-Cytoplasmic	105	227	0.63
Transmembrane Helix	228	255	0.78
Cytoplasmic	256	275	0.58
Transmembrane Helix	276	300	0.79
Non-Cytoplasmic	301	331	0.51
Transmembrane Helix	332	352	0.91
Cytoplasmic	353	361	0.54