YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|91074691, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	17	0.56
Transmembrane Helix	18	40	0.90
Cytoplasmic	41	46	0.51
Transmembrane Helix	47	69	0.86
Non-Cytoplasmic	70	77	0.50
Transmembrane Helix	78	102	0.83
Cytoplasmic	103	122	0.50
Transmembrane Helix	123	140	0.73
Non-Cytoplasmic	141	141	0.18
Transmembrane Helix	142	158	0.75
Cytoplasmic	159	160	0.44
Transmembrane Helix	161	187	0.79
Non-Cytoplasmic	188	200	0.61
Transmembrane Helix	201	220	0.88
Cytoplasmic	221	229	0.61
Transmembrane Helix	230	248	0.79
Non-Cytoplasmic	249	255	0.73
Transmembrane Helix	256	273	0.91
Cytoplasmic	274	308	0.87
Transmembrane Helix	309	331	0.79
Non-Cytoplasmic	332	374	0.88
Transmembrane Helix	375	394	0.95
Cytoplasmic	395	412	0.84
Transmembrane Helix	413	434	0.87
Non-Cytoplasmic	435	442	0.70
Transmembrane Helix	443	463	0.88
Cytoplasmic	464	472	0.71
Transmembrane Helix	473	495	0.64
Non-Cytoplasmic	496	504	0.55
Transmembrane Helix	505	522	0.72
Cytoplasmic	523	533	0.76
Transmembrane Helix	534	553	0.94
Non-Cytoplasmic	554	558	0.67

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDCRRPAMNL WQQNYDPAGN IWLSSLIASL PILFFFFALI KLKLKGYVAA SWTVAIALAV  60
   61 ALLFYKMPVA NALASVVYGF FYGLWPIAWI IIAAVFVYKI SVKTGQFDII RSSILSITPD 120
  121 QRLQMLIVGF CFGAFLEGAA GFGAPVAITA ALLVGLGFKP LYAAGLCLIV NTAPVAFGAM 180
  181 GIPILVAGQV TGIDSFEIGQ MVGRQLPFMT IIVLFWIMAI MDGWRGIKET WPAVVVAGGS 240
  241 FAIAQYLSSN FIGPELPDII SSLVSLLCLT LFLKRWQPVR VFRFGDLGAS QVDMTLAHTG 300
  301 YTAGQVLRAW TPFLFLTATV TLWSIPPFKA LFASGGALYE WVINIPVPYL DKLVARMPPV 360
  361 VSEATAYAAV FKFDWFSATG TAILFAALLS IVWLKMKPSD AISTFGSTLK ELALPIYSIG 420
  421 MVLAFAFISN YSGLSSTLAL ALAHTGHAFT FFSPFLGWLG VFLTGSDTSS NALFAALQAT 480
  481 AAQQIGVSDL LLVAANTTGG VTGKMISPQS IAIACAAVGL VGKESDLFRF TVKHSLIFTC 540
  541 MVGVITTLQA YVLTWMIP