YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|226902883, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPLYYRQLI AGVFMNQSYG RLVSRAAIAA TAMASLLLLI KIFAWWYTGS VSILAALVDS  60
   61 LVDIGASLTN LLVVRYSLQP ADDNHSFGHG KAESLAALAQ SMFISGSALF LFLTGIQHLV 120
  121 SPTPMTDPGV GVIVTIVALI CTIILVSFQR WVVRRTQSQA VRADMLHYQS DVMMNGAILL 180
  181 ALGLSWYGWH RADALFALGI GIYILYSALR MGYEAVQSLL DRALPDEERQ EIIDIVTSWP 240
  241 GVSGAHDLRT RQSGPTRFIQ IHLEMEDSLP LVQAHMVADQ VEQAILRRFP GSDVIIHQDP 300
  301 CSVVPREGKR SMLS

Type	Start	End	Confidence
Cytoplasmic	1	20	0.97
Transmembrane Helix	21	45	0.88
Non-Cytoplasmic	46	52	0.76
Transmembrane Helix	53	74	0.90
Cytoplasmic	75	94	0.92
Transmembrane Helix	95	116	0.91
Non-Cytoplasmic	117	128	0.80
Transmembrane Helix	129	152	0.88
Cytoplasmic	153	166	0.92
Transmembrane Helix	167	187	0.88
Non-Cytoplasmic	188	193	0.72
Transmembrane Helix	194	213	0.90
Cytoplasmic	214	314	0.96