YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|117626609, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.75
Transmembrane Helix	10	36	0.84
Non-Cytoplasmic	37	53	0.71
Transmembrane Helix	54	76	0.87
Cytoplasmic	77	96	0.77
Transmembrane Helix	97	114	0.87
Non-Cytoplasmic	115	115	0.16
Transmembrane Helix	116	130	0.63
Cytoplasmic	131	131	0.16
Transmembrane Helix	132	154	0.67
Non-Cytoplasmic	155	172	0.40
Transmembrane Helix	173	194	0.83
Cytoplasmic	195	221	0.56
Transmembrane Helix	222	246	0.84
Non-Cytoplasmic	247	253	0.58
Transmembrane Helix	254	278	0.84
Cytoplasmic	279	290	0.55
Transmembrane Helix	291	312	0.87
Non-Cytoplasmic	313	323	0.50
Transmembrane Helix	324	345	0.76
Cytoplasmic	346	348	0.38
Transmembrane Helix	349	371	0.79
Non-Cytoplasmic	372	376	0.41
Transmembrane Helix	377	401	0.68
Cytoplasmic	402	414	0.42
Transmembrane Helix	415	438	0.87
Non-Cytoplasmic	439	439	0.46

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLIIIAAGV ALLLILMIGF KVNGFIALVL VAAVVGFAEG MDAQAVLHSI QNGIGSTLGG  60
   61 LAMILGFGAM LGKLISDTGA AQRIATTLIA TFGKKRVQWA LVITGLVVGL AMFFEVGFVL 120
  121 LLPLVFTIVA SSGLPLLYVG VPMVAALSVT HCFLPPHPGP TAIATIFEAN LGTTLLYGFI 180
  181 ITIPTVIVAG PLFSKLLTRF EKAPPEGLFN PHLFSEEEMP SFWNSIFAAV IPVILMAIAA 240
  241 VCEITLPKTN TVRLFFEFVG NPAVALFIAI VIAIFTLGRR NGRTIEQIMD IIGDSIGAIA 300
  301 MIVFIIAGGG AFKQVLVDSG VGQYISHLMT GTTLSPLLMC WTVAALLRIA LGSATVAAIT 360
  361 TAGVVLPIIN VTHADPALMV LATGAGSVIA SHVNDPGFWL FKGYFNLTVG ETLRTWTVME 420
  421 TLISIMGLLG VLAINAVLH