YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57636968, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDLFQNAPP YIQALIAGII TWLLTALGAA AVFIFKKVND KVLNSMQGFA AGIMIAASFW  60
   61 SLLQPAIESS ENSAMPWLPA AIGFILGGVF IRVLDYIIPH IHQNAQDKNQ QQEGVPTSLG 120
  121 KNALLVLAIT LHNIPEGLSI GVAFGGVVSG NSHATFLGAI GLAIGIGIQN IPEGAALSMP 180
  181 IRAAGATRWK AFNYGQASAI VEPIFATIGA AAILVVNPIL PYALAFAAGA MIFVVVEELI 240
  241 PDSQSSNNTD LATLSLMIGF TIMMILDVAL G

Type	Start	End	Confidence
Non-Cytoplasmic	1	13	0.86
Transmembrane Helix	14	35	0.95
Cytoplasmic	36	42	0.88
Transmembrane Helix	43	63	0.90
Non-Cytoplasmic	64	74	0.75
Transmembrane Helix	75	96	0.89
Cytoplasmic	97	122	0.83
Transmembrane Helix	123	144	0.74
Non-Cytoplasmic	145	152	0.69
Transmembrane Helix	153	172	0.90
Cytoplasmic	173	191	0.85
Transmembrane Helix	192	214	0.87
Non-Cytoplasmic	215	218	0.74
Transmembrane Helix	219	240	0.83
Cytoplasmic	241	250	0.71
Transmembrane Helix	251	270	0.92
Non-Cytoplasmic	271	271	0.87