YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTG3C_STAES
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	14	0.92
Transmembrane Helix	15	36	0.92
Non-Cytoplasmic	37	59	0.83
Transmembrane Helix	60	81	0.64
Cytoplasmic	82	82	0.21
Transmembrane Helix	83	109	0.71
Non-Cytoplasmic	110	128	0.57
Transmembrane Helix	129	150	0.90
Cytoplasmic	151	169	0.57
Transmembrane Helix	170	193	0.88
Non-Cytoplasmic	194	208	0.49
Transmembrane Helix	209	232	0.74
Cytoplasmic	233	274	0.51
Transmembrane Helix	275	296	0.73
Non-Cytoplasmic	297	302	0.34
Transmembrane Helix	303	337	0.74
Cytoplasmic	338	338	0.02
Transmembrane Helix	339	371	0.66
Non-Cytoplasmic	372	378	0.53
Transmembrane Helix	379	402	0.86
Cytoplasmic	403	675	0.70

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKKLFGQMQ RIGKALMLPV AILPAAGLLL AIGTAFQGEA LQHYLPFIKN DIVQQIANML  60
   61 TGAGGIIFDN LPIIFALGVA IGLAGGDGVA AIAAFVGFII LNKTMGAFLH VTPDKLSDPT 120
  121 NGYANVLGIP TLQTGVFGGI IIGALAAWCY NKFYNITLPS YLGFFAGKRF VPIMMATTSF 180
  181 ILAFPMAIIW PTIQNGLNAF SEGLLDSNTG LAVFLFGFIK RLLIPFGLHH IFHAPFWFEF 240
  241 GSWKNAAGEI IRGDQRIFIE QIREGAHLTS GKFMQGEFPV MMFGLPAAAL AIYQTAKPEN 300
  301 KKVVAGLMIS AALTSFLTGI TEPLEFSFLF VAPFLFVIHA VLDGLSFLTL YLLNVHLGYT 360
  361 FSGGFIDYVL LGILPNKTAW WLVIPVGIIY AVIYYFVFRF LIVKFNYKTP GREDKKSSVT 420
  421 TTSASQLPFD VLKAMGGKEN IKHLDACITR LRVEVNEKSK VDVAGLKSLG ASGVLEVGNN 480
  481 MQAIFGPKSD QIKHDMAKII SGEITKPSET TIDEEVSDDP VHVEDIVETE IYAPGHGEII 540
  541 PLSEVPDKVF SEKMMGDGIG FVPDSGEIVA PFDGTVKTIF PTKHAIGLES DSGVEVLIHI 600
  601 GIDTVKLNGE GFESLVNTDE PVTQGQPLMK IDLEYLKEHA PSIITPVIIT NQEDKTLTIE 660
  661 DVKQVDPGKA IMTIK