YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|31753114, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.71
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HHHSPTLREH GRRTRTSLLE AMATTAMALS PSSFAGKAVK DLPSSALFGE ARVTMRKTAA  60
   61 KAKPVSSGSP WYGSDRVLYL GPLSGDPPSY LTGEFPGDYG WDTAGLSADP ETFAKNRELE 120
  121 VIHCRWAMLG ALGCVFPELL ARNGVKFGEA VWFKAGSQIF SEGGLDYLGN PSLVHAQSIL 180
  181 AIWACQVVLM GAVEGYRVAG GPLGEIVDPL YPGGSFDPLG LADDPEAFAE LKVKEIKNGR 240
  241 LAMFSMFGFF VQAIVTGKGP LENLADHLSD PVNNNAWAFA TNFVPGK

Type	Start	End	Confidence
Cytoplasmic	1	121	0.51
Transmembrane Helix	122	141	0.39
Non-Cytoplasmic	142	287	0.61