YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28202793, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVEYFISENM KIKRKFVKRL VWIAPIMVIL LSVFLTSNYF QVCIYNWWYT FILSGVIAIE  60
   61 GCFLYKIDGA MKNKSVMALP VDLKKVWIAK ILVAVKNIAI SCMIIFITGQ LSVFVIPIRS 120
  121 ESNILMLSGF IGILVIIITS IWEIPLWFFL GNKIGMFPTI ILSLATNIFS IVVAVRKFWW 180
  181 INPFSYTSRL MCPILRILPN GLLAKEGSAT FTPELLNTSS IPFGIGVSIV LFIVITYLTA 240
  241 KWYERQEVK

Type	Start	End	Confidence
Cytoplasmic	1	19	0.95
Transmembrane Helix	20	40	0.93
Non-Cytoplasmic	41	46	0.81
Transmembrane Helix	47	67	0.93
Cytoplasmic	68	86	0.95
Transmembrane Helix	87	114	0.77
Non-Cytoplasmic	115	123	0.82
Transmembrane Helix	124	146	0.88
Cytoplasmic	147	155	0.71
Transmembrane Helix	156	178	0.87
Non-Cytoplasmic	179	219	0.94
Transmembrane Helix	220	240	0.94
Cytoplasmic	241	249	0.90