YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28270530, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	26	0.97
Transmembrane Helix	27	48	0.92
Non-Cytoplasmic	49	55	0.81
Transmembrane Helix	56	76	0.94
Cytoplasmic	77	96	0.91
Transmembrane Helix	97	115	0.96
Non-Cytoplasmic	116	163	0.94
Transmembrane Helix	164	183	0.88
Cytoplasmic	184	188	0.93
Transmembrane Helix	189	208	0.95
Non-Cytoplasmic	209	218	0.82
Transmembrane Helix	219	239	0.87
Cytoplasmic	240	251	0.81
Transmembrane Helix	252	270	0.96
Non-Cytoplasmic	271	279	0.78
Transmembrane Helix	280	300	0.89
Cytoplasmic	301	395	0.80
Transmembrane Helix	396	416	0.92
Non-Cytoplasmic	417	660	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNENLRSVNM SRTMSRMNRH RMNPRRYITG FDGIRTLAVL GVIIYHLMPA SLQGGYLGVP  60
   61 IFFVVSGYLI TDILLQDILS RGHVRIWRFL GHRMRRLYPA FVTMLLGTTA YITLFQRSLL 120
  121 TNIRATVLTN LVYVYNWFEI NHGQSYFDRF NGESPFTHLW SLSIEGQYYL FWPLVIGILM 180
  181 VIFKKRSRVF WFMMIAAGIS AITMAMLYDP ANTNRVYYGT DTRMFAILLG SGLAFIWPSR 240
  241 ELSADIANVN RVTLDILGGA SLIAIIWIFF QMSGQSDFTY RGGMLLFTVL STVLVATVAH 300
  301 PASHLNRVLT NPLFKYVGQR SYGIYLYQFP VMIFYETKVK NIGDHLLLNS LIEVALILIV 360
  361 TELSYRFIEN PMRHYDYSRL LVDFKDFLRK PKFNRVTTAI VALTTVLFVI TAVGFVQQPS 420
  421 KAEANKKTEL QKTIAANSKA ADKKNAAALK RQKAAQAAAA SSKKVATEKM QTKQAEAKLN 480
  481 SKQKQVEKEY DLKPQVVLAM ANTDLTAIGD SVLLDVSSDL QDVIPGTVVQ GRVGRQVTEV 540
  541 PGIINSLKSQ GQLAHNVLLN IGTNGTITDD QAEQVVKLIG KDRQIFWVTA HVPTQSWQNQ 600
  601 VNAQIAKTAK KHANVHVIDW HGRAQNQSGW FADDNVHPNT TGNRQLTNLI ANRIAEVNNN 660
  661