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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|28379477, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.93
Topology Confidence: 0.89
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRYTRGKWRV TNPKVWLFSS VLILGWRIVP TVAQASEAET VTMSSHSVQL ETDNQDQLTE  60
   61 VARISKTAVT RDSHSVTAQS SKSADRTSSE QPATTGTVEA VSPTTSEAQQ RSTQQDKTAV 120
  121 DQQASDSTAA SAGASTNQAS AATSSDQAPA ANSTGTHHAI DMASSASALG ADSGAHSESL 180
  181 SEAQHSGGQG KTIDSDLSGT VHSQSSVSTV TTATPVNSNS SLESDKFTST RSRAVAATDQ 240
  241 MSSRVEKRAL NKTNVTKSIN IPVATKQPSK QRTVTASSFL TTAKNLADKN YLDQYAKQHG 300
  301 QAALIALIQD WLSTYRIIAL TGITIVNSSF DGSVATISGG LHVINTGATI RSGQDDEWET 360
  361 IINGGLSVTN NTITFTTTNG LVDRPVANQD MDFTKPRPTG NGAIKGLPSV TVDSSLINAQ 420
  421 EFSQAQINIS DFYDQLVTAG TILSATNGGT LSKMLIGESG TADLGSYQGH HYYAVNIDLN 480
  481 DWHSGIRTTG FNNDDVVIYN VVTAAPALTI GGGFSSSTPN LVWNFNHAMR IQNTTMITGK 540
  541 IVAPHAVFTT NQNVDSAAVL QYGYGDVDSA IRETITSQNE HNYGFGQVVT DDPLDYLIAV 600
  601 IKSDGTSIDT LAGFRHLLAT GQLKITITDA AGTRLSGLNA VDTHIAGQHC YLITYQFGDQ 660
  661 TATTWLNVQP SHEPIIPISR IPEYSAITRT INYQDERTGA VLAGPVIQNV RVVRFAIFNA 720
  721 KTHELLGYDT NGDGIVDTSD GTIAWLLVPP TDQDWVQVVS PDLSAQGYQA PDIPVVAGQT 780
  781 VIINGGDRTM NTNVIVKYQQ QTHIATTQRT VTRTINYIDG GTLQPIASLH AVVQTVKYQL 840
  841 LAVVAHDGTI LGYDTNGDGQ IETQLADEAW LIVGSGPWFG AVKSPDLSHE GYAAPDLKVV 900
  901 PEQMVAGVDD KDVTINVYYR LATQAVTVYQ NKRRVISYID RQTHQSIATT VQQLVIYQRT 960
  961 AIIEKKTGKC LGYDLNGDGL VDTSQADYAW ILVGSGQFAA VTSPTLVVQG YTDPDIRTVA1020
 1021 AQTVAITDPD LMTTIVTYDH RIITVTPGNP ARPGQPVDPD NPNILFPDEG GDTDLTHTVT1080
 1081 RIIHYVYEDG TTAAASVLQT VQFQRNAMID LVTGEVTYQE WVPVSVTEMA GVISPIVAGA1140
 1141 TTTLTEVAAQ QVSVTTADQV VVVTYKKSAI KPEEPGQPEQ PSQPEEPGQP EQPSQPEEPG1200
 1201 QPEQPSQPEE PGHPEQPSQP EEPGQPEQPS QPEEPGQSEK PGELQKPSQP ADSEQPDGLS1260
 1261 DQANLSRNQA EQSRTSQPSQ AESDQSVVQT NQQKTAASVS GIGWVSGPAV SKRTTKHHRM1320
 1321 TTLPQTDEQN TQLSLLGMIG LALSSILGWL KIKSRD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle