YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28811265, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQDPIANLK LARKGPIVSI IVYLLLSVAK LLAGYLLNAS SLIADGFNNL SDIVGNVALL  60
   61 IGLHLASQPA DANHKFGHWK IEDLSSLVTS FIMFLVGFQV LIHTIKSIFS GQQVDIDPLG 120
  121 AIVGIVSAFV MLGVYVFNKR LSKRVKSSAL VAASKDNLAD AVTSIGTSIA IIAASLHLPV 180
  181 IDHIAAMIIT FFILKTAFDI FMESSFSLSD GFDSRHLKKY EKAILEIPKI VAVKSQRART 240
  241 YGSNVYLDIV LEMNPDLSVY ESHSITEKVE QLLSDQFSIY DIDIHVEPAM IPEEEIFDNV 300
  301 AKKLYRYEKL ILSKVPDYDH YIAKSFQLID ANGQTVNYEQ FLNQEIYYPS NFNHFQIESI 360
  361 SQKTMLVTYQ LNGNQRTSIW RRHESWSLLF HQITPIAKRQ LHHTHYRIVK M

Type	Start	End	Confidence
Cytoplasmic	1	16	0.92
Transmembrane Helix	17	37	0.89
Non-Cytoplasmic	38	48	0.72
Transmembrane Helix	49	67	0.88
Cytoplasmic	68	83	0.87
Transmembrane Helix	84	105	0.89
Non-Cytoplasmic	106	117	0.83
Transmembrane Helix	118	137	0.96
Cytoplasmic	138	157	0.93
Transmembrane Helix	158	178	0.72
Non-Cytoplasmic	179	182	0.52
Transmembrane Helix	183	202	0.76
Cytoplasmic	203	411	0.67