YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28897616, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADKKATLHV EGQAPIELPI MDGTLGTPVI DVRKLGANGY FTFDPGFLAT ASCESSITYI  60
   61 DGGKGILLHR GYPIDQLANN ADYLEVCYIL LYGEAPTREQ YEQFKTTVTR HTMVHEQIAS 120
  121 FFHGFRRDAH PMAVMCGVVG ALAAFYHDSL DINNDEHREI AAYRLLSKMP TLAAMCFKYS 180
  181 VGQPFIYPRN DLSYAENFLH MMFANPCEEY EVNPVVARAM DKIFTLHADH EQNASTSTVR 240
  241 LAGSSGANPF ACIAAGIASL WGPAHGGANE ACLKMLEEIG SVDNIPEYVE RAKDKDDPFR 300
  301 LMGFGHRVYK NYDPRATVMR ETCHEVLKEL NIKDPLLDVA MELERIALSD EYFVSKKLYP 360
  361 NVDFYSGIIL KAIGIPVSMF TVIFAISRTI GWIAHWNEMH SDPLNRIGRP RQLYKGETQR 420
  421 EFSPLHERE

Type	Start	End	Confidence
Non-Cytoplasmic	1	367	0.61
Transmembrane Helix	368	392	0.68
Cytoplasmic	393	429	0.56